PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5036_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 375aa    MW: 40473.1 Da    PI: 7.7959
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5036_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.52.6e-22268330163
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++lk ++++l +e+
  RrC5036_p1 268 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLKSQYEELLAEN 330
                 89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-2722104IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-11139175No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-17260326No hitNo description
SMARTSM003381.0E-20268332IPR004827Basic-leucine zipper domain
PfamPF001709.4E-21268330IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.668270333IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.13E-11271327No hitNo description
CDDcd147027.66E-24273323No hitNo description
PROSITE patternPS000360275290IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVGSEMEKTG QENEPKTPPP PAPPVTSQEP SSSSAVSAGM STTPDWSGFQ AYSPMPPHGY  60
VASSPQPHPY MWGVQHMMPP YGTPPHPYVA MYPPGGMYGH PSLPPGSYPY SPYAMPSPNG  120
MAEASGNTEG DGKQAEVKEK LPIKRSKGSL GSLKMIIGKN NETGKNSGAS ANGALLRALL  180
MVQVKEVMQI HKTNNGKDGS DSAHGPPPRN GSNQPVNQIV PIMPTGVPGP PTNLNIGMEY  240
WSGHGNVSTT VPGVVVDGSQ SQTWIQDERE LKRQKRKQSN RESARRSRLR KQAECDELAQ  300
RADVLNGENA SLRAEINKLK SQYEELLAEN NSLKNRFTAV PSQEGVNLDK KEQEPEASTR  360
QDVAETTYGS YNNSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290RRSRLRK
2284291RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535051e-153AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447676.10.0PREDICTED: bZIP transcription factor 68
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLA0A078FG900.0A0A078FG90_BRANA; BnaA09g24610D protein
TrEMBLA0A397XX620.0A0A397XX62_BRACM; Uncharacterized protein
STRINGBo5g048660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-167basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]