PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC508_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 375aa    MW: 40988 Da    PI: 5.4628
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC508_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
               +C+ ++e++   +C+++  +lC +C  + H+       H++
  RrC508_p5  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
               6*****************************65677777765 PP
2zf-B_box22.72.1e-074695441
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg............Htvvp 41
                +C++++ ++++  C + ++ lC++C  ++H++            H++++
  RrC508_p5 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnnssssssnnHKRQT 95
               68*****************************8877788888888887765 PP
3CCT62.51.3e-21318361144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  RrC508_p5 318 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFVKAG 361
                99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000219.25E-8447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0154396IPR000315B-box-type zinc finger
CDDcd000211.88E-54776No hitNo description
SMARTSM003360.964896IPR000315B-box-type zinc finger
PROSITE profilePS5101715.18318360IPR010402CCT domain
PfamPF062032.5E-16318360IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNN NNSSSSSSNN HKRQTISCYS GCPSSSELAS IWSFCLELAG  120
QSGCEQEMGL MNIDDDGQTN QNCNDDNKKD GVAGGSSLRP ETSSAAPATS SFPKEVRVCE  180
DDFYGNLGMD EVDLALENYE ELFGTAFNTS GELFGQGGID CLFQKHHQAA AAPEGGNLVQ  240
PAESNDDSFM SSKTEPIICF TSKPAHSNNI SFSGVTGDSS AGDFQECGAS SSMQLSGEPP  300
WYPQTSQDNN ACSQSVTRNN AVMRYKEKKK ARKFDKTVRY ASRKARADVR RRVKGRFVKA  360
GEAYDYDPLT PTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486888.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_018486889.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A078HDR00.0A0A078HDR0_BRANA; BnaA05g29980D protein
TrEMBLA0A397ZMF60.0A0A397ZMF6_BRACM; Uncharacterized protein
STRINGBo5g141290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9