PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5091_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 198aa    MW: 22616.8 Da    PI: 9.4198
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5091_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.16.7e-1283144263
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                 k+ +r +rk +NRe+ArrsR +K++ +ee +    +L +eN++L + l     +++  k+e+
  RrC5091_p1  83 KDERRKKRKKSNRESARRSRIKKQKHLEEVRSQLNQLNTENRDLVNGLRYVMHHCQHAKMES 144
                 7789********************************************99999999988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.5E-981138No hitNo description
SMARTSM003386.3E-1282146IPR004827Basic-leucine zipper domain
PfamPF001704.7E-983143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.38184126IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.01E-986137No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
CDDcd147023.03E-1493138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSSIFPVFSS EPGTCSALES GLTPWNHASD IFSMFDSPAC LVEVDPGLEK TNSCPIQTKN  60
NPNPGLEDKP FNNTGLSTFL PDKDERRKKR KKSNRESARR SRIKKQKHLE EVRSQLNQLN  120
TENRDLVNGL RYVMHHCQHA KMESDRIRLE HKILHDKLLN LRQALVLRQV QQSSTCTCVD  180
STVVTVHQNP SMIKDRVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18591RRKKRKK
285106RRKKRKKSNRESARRSRIKKQK
38791KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022572835.11e-106bZIP transcription factor 44-like
RefseqXP_022573491.11e-106bZIP transcription factor 44-like
TrEMBLA0A397Z1761e-110A0A397Z176_BRACM; Uncharacterized protein
STRINGBra024424.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.11e-27basic leucine-zipper 5