PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5114_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 258aa    MW: 30813.1 Da    PI: 9.0734
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5114_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.41.2e-141042309128
         NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                 Ptd e+v++yLk  v++++   ++++++ ++y v Pw +  +  + ++ ++ +yfF++r +k+   +r     + g W+   +d+ ++sk++++ g k+
  RrC5114_p2 104 PTD-EIVSYYLKMCVDKRNDWPSHFLESEQVYGVAPWMIVdAdqSSAELQEGTYFFVNRTEKSG--RRD--GCDVGCWRIMRRDRVIISKRNKVLGFKR 197
                 555.89**********99966657899************63332222234577*****999863..333..34679*********************** PP

         NAM 105 tLvfykgrapkge.........ktdWvmheyrl 128
                 ++ f  +++ +++         k +Wvm+ey l
  RrC5114_p2 198 VFKFCVKEKAEPVykfwgdekcKVTWVMDEYML 230
                 *****4433333333444444499*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.745164IPR003441NAC domain
SuperFamilySSF1019412.62E-8362IPR003441NAC domain
PROSITE profilePS5100519.3895246IPR003441NAC domain
SuperFamilySSF1019411.57E-21104244IPR003441NAC domain
PfamPF023652.1E-9105229IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MARDKLIKTE ETGTILGFKK ILKFCEKDKK RSEQEEEERV WVMEEYKLVD KWKHDQVICK  60
IRLLLQHEVS SLLAKHLSFL PKWIIPFSRE NFMPRRDLCA PNIPTDEIVS YYLKMCVDKR  120
NDWPSHFLES EQVYGVAPWM IVDADQSSAE LQEGTYFFVN RTEKSGRRDG CDVGCWRIMR  180
RDRVIISKRN KVLGFKRVFK FCVKEKAEPV YKFWGDEKCK VTWVMDEYML AKKKEQGKVI  240
CRISLLFPLP LELHVRDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438101.11e-177PREDICTED: uncharacterized protein LOC108810489
TrEMBLA0A3P5XZD01e-145A0A3P5XZD0_BRACM; Uncharacterized protein
STRINGBo4g084880.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1822159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60380.11e-39NAC family protein