PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5164_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CO-like
Protein Properties Length: 399aa    MW: 44973.7 Da    PI: 5.869
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5164_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.3e-081457340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + +k+++++C  ++ +lC++C  + H+       H++v
  RrC5164_p1 14 ARACDSCVKKRARWYCAADDAFLCHSCDGSVHSAnplacrHERV 57
                578*****************************668888888876 PP
2CCT68.51.8e-23350393144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  RrC5164_p1 350 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 393
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.4091259IPR000315B-box-type zinc finger
SMARTSM003361.5E-71259IPR000315B-box-type zinc finger
PfamPF006433.5E-61457IPR000315B-box-type zinc finger
CDDcd000212.62E-81559No hitNo description
PfamPF062035.1E-18350392IPR010402CCT domain
PROSITE profilePS5101716.083350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMKSLANAVG GKTARACDSC VKKRARWYCA ADDAFLCHSC DGSVHSANPL ACRHERVRLK  60
TASAGKHRGD ASSSPPHPAT WHQGFTRKAR TPRGGKKSHT MVFHDLVPEM SSEDFEVEEQ  120
LIFEVPVLNP MGDEQCFKEA KFPMMPVCFK SSEEEDDNTE SCLNGLFPTE MELAQFSADV  180
ETLLGGGTDR ELHAMEDLGL SEILKIEKEE VKEEEEIATR EVCDLDAANE TSPFEISFDY  240
ESSHKTALEE DDEKEDVMKN LVDVGVNEMS GRIKEEKKEK VLMLRLDYET VISTWGSQGT  300
PWTALEPPEI DLDMLCCPTN TMGESGGEAH HHNHFRGLGL HMREAGDGGR EARVSRYREK  360
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRSSMAAAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360376RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443039.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 6-like
SwissprotQ8LG760.0COL6_ARATH; Zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A397YP880.0A0A397YP88_BRACM; Uncharacterized protein
STRINGBra004035.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]