PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5178_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 247aa MW: 27004.6 Da PI: 8.7699

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5178_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.7	1.3e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e+ RrC5178_p2 2 SCNGCRVLRKGCNESCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFKSLLYEACGRTVNPVNGAIGMLWTGNWKICQAAVET 100 6*******************9998666778**************************************************************999 PP DUF260 95 all 97 +l+ RrC5178_p2 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.354	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSCNGCRVLR KGCNESCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFKSLLYE ACGRTVNPVN GAIGMLWTGN WKICQAAVET VLRGGSLRPV PEILLTHGGG 120 FAGFPPSASE EASEMCTEML KLQQNNDGSR DRNMYHHSRF SSPRSRSMLD SSPTKRKRQS 180 SELDISVNPT FPMKTLPSST RQRSGTPSMN SEESVTTTTT TFWDNTASGF RYGNGGGETS 240 KLLDLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454565.1	1e-160	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-124	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A291LR19	1e-134	A0A291LR19_BRARR; Transcription factor LBD37b
TrEMBL	A0A397YK28	1e-134	A0A397YK28_BRACM; Uncharacterized protein
TrEMBL	M4D6Q4	1e-134	M4D6Q4_BRARP; Uncharacterized protein
STRING	Bra012164.1-P	1e-135	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-124	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]