PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC519_p7

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 80aa MW: 9095.3 Da PI: 9.2793

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC519_p7	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.6	2.9e-10	20	80	10	79
HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 ++k+++ ++p +f+++h +s++l+l++ s rsWev+l ++++ +++GWk+F +g++ +f RrC519_p7 20 SGKNSIPMIPDSFISNHV----KSTKLKLTTgVSDRSWEVEL--DGQR----FARGWKQFSVHHGVRNDEF 80 6788889*****8885....4557888887999***..8888....9***********98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.0E-8	8	79	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-7	9	79	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.065	11	80	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MVDPVMVSSN NKPIFFTDLS GKNSIPMIPD SFISNHVKST KLKLTTGVSD RSWEVELDGQ 60 RFARGWKQFS VHHGVRNDEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470434.1	3e-44	PREDICTED: putative B3 domain-containing protein REM4 isoform X1
Refseq	XP_018470435.1	2e-44	PREDICTED: putative B3 domain-containing protein REM4 isoform X2
Swissprot	Q9SB79	6e-23	REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBL	A0A3N6RFU8	4e-42	A0A3N6RFU8_BRACR; Uncharacterized protein (Fragment)
TrEMBL	A0A3P6G227	1e-41	A0A3P6G227_BRAOL; Uncharacterized protein
STRING	Bra011288.1-P	5e-42	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9658	15	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31630.1	2e-25	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]