PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC519_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 394aa    MW: 43976.8 Da    PI: 8.425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC519_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.7e-1521941189
               HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
         B3 11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
               +++++ ++p +f+++h++ k++s++l+l++  s rsWev+l  ++++    +++GWk+F   +g++  D++ F++dg+++
  RrC519_p8 21 GQNSIPMIPDSFISNHMKGKTRSTKLKLTTdVSDRSWEVEL--DGQR----FARGWKQFSAHHGVRNDDVLSFRHDGDMC 94
               5667789*********88889999***9987999*******..8888....9**********************999865 PP
2B360.62.7e-19921741599
                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++l+++fa+++g+++ ++ ++ l +e+g+sW++ l+++k+ g+ ++ +GW +F++ ng+k+g ++ Fk+++ s++++v++++ +
  RrC519_p8  92 DMCLSNNFARSNGLNN-RHCEIDLLNENGKSWTLDLRHNKTTGQAYMCRGWTSFCEGNGIKTGSSCRFKFVQ-SGAKPVLQLCPN 174
                5899********9996.567************************99999********************998.9999**999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-13894IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-121095IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.5011192IPR003340B3 DNA binding domain
CDDcd100171.28E-101392No hitNo description
SMARTSM010195.0E-101598IPR003340B3 DNA binding domain
CDDcd100177.81E-1879173No hitNo description
PfamPF023624.6E-1891174IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-1793175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-1695174IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06995175IPR003340B3 DNA binding domain
SMARTSM010191.1E-1399175IPR003340B3 DNA binding domain
PROSITE profilePS508636.061206303IPR003340B3 DNA binding domain
SMARTSM010192.5E-7206292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-5209265IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-7210291IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-7212290IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVDPVMVSSN NKPIFFTDLS GQNSIPMIPD SFISNHMKGK TRSTKLKLTT DVSDRSWEVE  60
LDGQRFARGW KQFSAHHGVR NDDVLSFRHD GDMCLSNNFA RSNGLNNRHC EIDLLNENGK  120
SWTLDLRHNK TTGQAYMCRG WTSFCEGNGI KTGSSCRFKF VQSGAKPVLQ LCPNNTSTVL  180
HVPETKGDEI DSEDGSETAQ MNQNRTVEIE FKRYMLKSGQ LRIPALFARE NGINEAGEVT  240
LVNKDGVEWK LHLVSVKGHC LVANGVKKVG DSFTLDIIRG GTSPILKICS KSRMIEASRA  300
EEDMETCIQK KARVSGEGGS SRRTRASNKL SVDHPRNLQH KKASEPCSIS DQVSKVRQSI  360
VQTLTDVRLF RSELEVKEQN LETSLLEIDA LGMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-109AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470435.10.0PREDICTED: putative B3 domain-containing protein REM4 isoform X2
SwissprotQ9SB791e-116REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLA0A3N6RFU80.0A0A3N6RFU8_BRACR; Uncharacterized protein (Fragment)
STRINGBra023991.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.11e-118B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]