PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC519_p9
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 756aa    MW: 85524.1 Da    PI: 7.6161
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC519_p9genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1787184499
                E-..-HHHHTT-EE--H...HH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpk...kfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 + +++  k g+l+++     f++e g+kk  s ++tl d +gr+W  +l +  +++++++++++GW+e++kang++++D++v++++  +++++ +k+++
  RrC519_p9  87 LEYTPNRVKAGQLYISMassGFLSESGIKK--SGEITLLDNHGRKWPSYLHMtgQRGREWFYIRGGWREMCKANGVQVNDSFVLEFIC-ENANPIFKLHS 183
                556666667777766541114666667774..559***************8866666666*************************999.78889998876 PP

                S CS
         B3  99 k 99 
                k
  RrC519_p9 184 K 184
                5 PP
2B335.32.1e-112933581493
                T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 r +l  +f+++h ++      l   d s ++W+vkl  ++++    l +GW+eF+  ++  +gD++vF+++g++ f  +
  RrC519_p9 293 TRKTLDDEFLRNHTKV------LLTSDASDKRWKVKL--DGNK----LDGGWEEFAAVHNFSDGDVLVFSHNGDEVF--H 358
                5667778888777644......5557799********..9999....***********************9887777..3 PP
3B368.59.4e-22408505199
                EEEE-..-HHHHTT-EE--HHH..HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkf.aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+ + +++++l+++rl l+k+f + +++++k ++ ++ l +e+ r+W+++l+ + +sg++++t+GW +F++angL++gD++ +kl++ +++++++ ++++
  RrC519_p9 408 FLRARVTPYSLNKDRLDLSKDFkFMSFDENK-KQCEIYLVNEEERKWTLRLSRNISSGSFYITRGWANFCSANGLRQGDICNLKLTQ-NGETPTLLLCSR 505
                6677899*************99433444444.4459************************************************998.667788888876 PP
4B360.13.8e-19550644499
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +++  k+g l+++  f++e g++  +s+++tl d++gr+W+ +l++  + ++++++++kG +e++kang+k++D++v+++++ +++++ +k+++k
  RrC519_p9 550 LQYTPNRVKTGHLTISSVFLRESGIN--KSMEITLLDKDGRKWSSYLQMsgQPGREMFYMRKGCREMCKANGVKVNDSFVLEFIW-EDANPIFKFHSK 644
                556677777888***********999..799****************9945555555****************************.899899998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-1479179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1481174IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-1884184IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43484185IPR003340B3 DNA binding domain
SMARTSM010193.2E-1584185IPR003340B3 DNA binding domain
CDDcd100171.12E-1297183No hitNo description
PROSITE profilePS5086310.292276365IPR003340B3 DNA binding domain
SMARTSM010192.4E-8276365IPR003340B3 DNA binding domain
CDDcd100172.89E-7286359No hitNo description
Gene3DG3DSA:2.40.330.103.4E-10301361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-9304361IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-16406514IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-19408505IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-18408507IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.171408505IPR003340B3 DNA binding domain
SMARTSM010192.1E-22408506IPR003340B3 DNA binding domain
CDDcd100176.73E-17418504No hitNo description
Gene3DG3DSA:2.40.330.106.0E-15544643IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15544642IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-20547644IPR003340B3 DNA binding domain
SMARTSM010192.0E-22547645IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292547645IPR003340B3 DNA binding domain
CDDcd100172.29E-13555643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MVTLDDEFLR NHTKVLLTSD ASDKIWKVKL DGNRLAGGDV LLEKNKKPEA DTSPGDSCLL  60
RASVTPSSLI DDRLTTSEKN TPRFLTLEYT PNRVKAGQLY ISMASSGFLS ESGIKKSGEI  120
TLLDNHGRKW PSYLHMTGQR GREWFYIRGG WREMCKANGV QVNDSFVLEF ICENANPIFK  180
LHSKIENKGK GNPVEKNQEV SDRRRTRGSS RPNTNLKRKQ PESCSVSDQV ANVKQSIQET  240
LNTIRHFNVE LKTREKNLEA SLLEVDGLGV FLNQDLLAFL ASSSEKSGVR VSTRKTLDDE  300
FLRNHTKVLL TSDASDKRWK VKLDGNKLDG GWEEFAAVHN FSDGDVLVFS HNGDEVFHVA  360
RSSNSDIEHE SPSFTDTDDT EVDDDADDAA GDILVEKNKK PEADTSCFLR ARVTPYSLNK  420
DRLDLSKDFK FMSFDENKKQ CEIYLVNEEE RKWTLRLSRN ISSGSFYITR GWANFCSANG  480
LRQGDICNLK LTQNGETPTL LLCSRESDNG HEDQEEEECP EADAGKICSV GGCSKEKTTL  540
EKNTRRFLTL QYTPNRVKTG HLTISSVFLR ESGINKSMEI TLLDKDGRKW SSYLQMSGQP  600
GREMFYMRKG CREMCKANGV KVNDSFVLEF IWEDANPIFK FHSKIEYKGK GKIITRKKRA  660
LHLSTVENTP EGSKRGCTRV SNRSNTNLKR EPPESCSVSD QVANVKRSIQ DTLNTIRYFR  720
SELETREKNL EASLLEVDDL GERILGISKI LNNNLV
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517721e-120AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468355.10.0PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLM4D4810.0M4D481_BRARP; Uncharacterized protein
STRINGBra011285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-139B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]