PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC52381_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 129aa MW: 14459 Da PI: 8.611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC52381_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	89	104	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC+ C+k++s+k+++ RrC52381_p1 89 FKCGQCNKTYSSKDEY 104 89**********9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
SSLSSXSTSH SRLYRFSSSV RSRFPSASIR AVALEPELNE TPNSDKKDTE TQSVKVEETQ 60 VFACPVCYKP LMRKGPSGIN LQAIYRSGFK CGQCNKTYSS KDEYLDLTVT AGFDSFNEVK 120 PITTELFRY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478395.1	2e-85	PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic
Swissprot	Q0WPT7	6e-55	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A0D3C5K2	4e-66	A0A0D3C5K2_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo4g190670.1	6e-67	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24258	2	4

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]