PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5274_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 207aa    MW: 22806.6 Da    PI: 7.7106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5274_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.7e-10145187652
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                 +++Er RR ri  ++ +L+el+P+     +k  s a++L +Ave+Ik
  RrC5274_p1 145 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVEHIK 187
                 689*********************7....688**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.205139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-8143187No hitNo description
Gene3DG3DSA:4.10.280.105.6E-10144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-8145187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-7145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSETVFSLGR PNGGYGGGGE RGPSRLKPEL RFSGGSSSSH QEHSSLPRIT EVEAAAAAVK  60
GVASTSMTFG NDHNNWDNSS SHISFTIDEP GKRSKTTDFF TLETQFSMPQ TSLEVARMES  120
MMNIPEDSVP CRARAKRGCA THPRSIAERE RRTRISGKLK KLQELVPNMD KQTSYADMLD  180
LAVEHIKVAE KGDGEMHLWG MQEAMMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0044503e-79AC004450.3 Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence.
GenBankCP0026853e-79CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434880.11e-130PREDICTED: transcription factor bHLH129-like isoform X1
SwissprotQ9ZW818e-96BH129_ARATH; Transcription factor bHLH129
TrEMBLA0A087H4V31e-113A0A087H4V3_ARAAL; Transcription factor bhlh
STRINGA0A087H4V31e-114(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103291833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.15e-74bHLH family protein