PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5291_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 463aa    MW: 51226.6 Da    PI: 5.8936
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5291_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-09316373562
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                 kr +r   NR +A rs +RK  +i eLe kv++L++e ++L  +   l+  +  l+++
  RrC5291_p1 316 KRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQFTLLQRDMMGLTNQ 373
                 899***************************************9999888777666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-18312376IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565314377IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-11316373No hitNo description
SuperFamilySSF579591.45E-11316372No hitNo description
PfamPF001702.3E-8316370IPR004827Basic-leucine zipper domain
CDDcd147031.01E-22317366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MGDTDTDMIH TSIPKPPHQL ELNPNLIQFS TDSARRVGVP PTSPYSQIPT TRPQQPQGAT  60
THSRSRSMSQ PSSFFSFDSL PPLSPSPFRD HHDLSAAFNN NTSSLLPPSP FTRCNSVVGE  120
SLPPRKSHRR SNSDIPTCFS PIPPRPLERS ISGGESPDWS TKTPFVKREE IDDLFSAYMN  180
LENIDALNSS EADDDNNNSK NGGESSRASG TTKTSDDTEE GESSSVNYES CGDRNNSLKR  240
RADGGGGGGG DVAPPTRHYR SVSVDSCFME KLSFGEEVSP TNSVSIEFKK GEFTAVEMKK  300
IMANDKLAEM ALSDPKRVKR ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQF  360
TLLQRDMMGL TNQNNELKFR LQAMEQQAQL RDALNEALSG EVQRLKLAIG ETSHNEADRS  420
KMQSLNADMF QQLNISQLTQ QPQPESQQNQ NGTMSPKPES NEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0808391e-151AY080839.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
GenBankAY1504351e-151AY150435.1 Arabidopsis thaliana unknown protein (At4g38900) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411679.10.0transcription factor RF2a
RefseqXP_009109518.10.0PREDICTED: transcription factor VIP1
RefseqXP_009109519.10.0PREDICTED: transcription factor VIP1
RefseqXP_009109520.10.0PREDICTED: transcription factor VIP1
TrEMBLA0A3P6CEH40.0A0A3P6CEH4_BRACM; Uncharacterized protein
STRINGBra010722.1-P0.0(Brassica rapa)
STRINGXP_006411679.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-171bZIP family protein