PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5322_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 290aa    MW: 33321.6 Da    PI: 6.0823
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5322_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.91.3e-20109168359
                 -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg+ WrKYGqK++k++++ rsYYrC+++    C ++k+ ++ +++p v  +tY g+H+++
  RrC5322_p2 109 DGFLWRKYGQKSIKNNKYERSYYRCSYNidhACGARKHEQQIKDNPPVYRTTYFGHHTCK 168
                 9**************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.187102170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-22102168IPR003657WRKY domain
SuperFamilySSF1182902.75E-21104169IPR003657WRKY domain
SMARTSM007742.8E-30107169IPR003657WRKY domain
PfamPF031064.5E-21109168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNSPHEKAVQ AILYGHSCAK RLKRRLEDPM ADDRSISNYD LATSIVHCFS SAISILSDKP  60
ISEDDQVSDL SSMDSSPPLL QRNHSKRRKI NSTNSTKNWR DDSPDPYYDG FLWRKYGQKS  120
IKNNKYERSY YRCSYNIDHA CGARKHEQQI KDNPPVYRTT YFGHHTCKIN NNHDSVFTAV  180
RDQVDVVGSS RIIQFGKELD QEKGSCLTDF SLSVKHEESI IKEETTDHYR EITGDDKDCQ  240
HVMDENQSSL SSSYTPPSSS VSETDMFDTD LLLNNLDSWD RYGLFDFGVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-151091681069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444308.10.0PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-120WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A3P6CS120.0A0A3P6CS12_BRACM; Uncharacterized protein
STRINGBra002421.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-117WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]