PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC541_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 153aa    MW: 17321.3 Da    PI: 5.0576
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC541_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-172069255
        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++  ++++ g
  RrC541_p5 20 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDVSARSISG 69
               799******.**********66.....34*******************99998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-102065IPR001471AP2/ERF domain
SMARTSM003801.3E-292083IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-202077IPR016177DNA-binding domain
CDDcd000183.16E-292076No hitNo description
PROSITE profilePS5103220.2312077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-272076IPR001471AP2/ERF domain
PRINTSPR003674.5E-92132IPR001471AP2/ERF domain
PRINTSPR003674.5E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSEEVK YLGVRRRPWG RYAAEIRNPF TKERHWLGTF DTAEEAALAY  60
DVSARSISGS LAKTNFFYTD NISLQIQPQD SSSDKALFDK TEEDGDADKM KLGSVLSDEG  120
HCFEYDFLLS GMPLSLLSDY NEDLPQIIGS SSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1816861081Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934542e-85AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026842e-85CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K232e-85AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476268.16e-58PREDICTED: ethylene-responsive transcription factor ERF088-like isoform X2
SwissprotQ3E7031e-49ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3P5YM102e-52A0A3P5YM10_BRACM; Uncharacterized protein
STRINGBo8g107890.11e-51(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.11e-42ERF family protein