PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5502_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 199aa    MW: 22686.6 Da    PI: 9.0604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5502_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-163881348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++++Ed+l+++++++lG++ W++Ia +++ gRt+++++ +w +yl
       RrC5502_p1 38 NFSKDEDDLFLKLHALLGNR-WSLIAGRLP-GRTDNEVRIHWETYL 81
                     79******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-151991IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-192885IPR009057Homeodomain-like
PROSITE profilePS5129423.3773185IPR017930Myb domain
SMARTSM007178.2E-153583IPR001005SANT/Myb domain
CDDcd001671.95E-123881No hitNo description
PfamPF002497.2E-153881IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MNKIRHHALS RPSGMIHRAK RYRIRGRKYA KPELKQSNFS KDEDDLFLKL HALLGNRWSL  60
IAGRLPGRTD NEVRIHWETY LEKKLMKMGI DPTNHRLYHH TNYTSRQYIN SSHKEHETDI  120
ISDQSSSVSE SCDDMSLLPV SRTICSEDNA SAGHNWLPDL NIGLVPMKTV NSLPGGSLQE  180
PSESSNHGSA SQETLLLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-12198542108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3791070.0JN379107.1 Brassica oleracea var. acephala myb-like transcription factor 2 (MYBL2-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453467.11e-147PREDICTED: myb-related protein 308
TrEMBLA0A397YSN51e-117A0A397YSN5_BRACM; Uncharacterized protein
STRINGBo6g112670.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.13e-88MYB-like 2