PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5514_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 335aa    MW: 37058 Da    PI: 7.4675
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5514_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-0697120326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  e C+ f+ +G C +G+ C FaHg
  RrC5514_p1  97 GEVCPEFRHGGDCTRGEECGFAHG 120
                 589********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.81E-593124IPR000571Zinc finger, CCCH-type
SMARTSM003560.0294121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.44195122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-497122IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-498120IPR000571Zinc finger, CCCH-type
SMARTSM003564.3130153IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDVEHHNSSH IGRPTVAIPS RKLLSSAKSP SSASSPHKDY YYDSDPDDPY AGDHFRMYEF  60
KIRRCTRSRS HDWTDCPFSH PGEKARRRDP RRYHYTGEVC PEFRHGGDCT RGEECGFAHG  120
VFECWLHPSR YRTEACKDGK HCTRKICFFA HSPRQLRVLP PPDSFISGGG GSALSPTSPL  180
LGLERSPPSS SPPLSPANKA AAISRLSRHR SSVTYKEVLN ELINSLDSFS LTQAASSASM  240
HASSSLSNHH HHLLPPWLDV GDRDLQFALS PSSTPSYLNG QLQPSFFSDE FTPRGGRVSD  300
ITEAATTSAE ARDKSSFEIG SSGDLDLGWV NDLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481822.10.0PREDICTED: zinc finger CCCH domain-containing protein 61-like
SwissprotQ9FKW21e-147C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBLA0A3P6EDD31e-170A0A3P6EDD3_BRAOL; Uncharacterized protein
STRINGBo7g067240.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44260.11e-121C3H family protein