 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC5519_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
bHLH |
| Protein Properties |
Length: 219aa MW: 25142.5 Da PI: 8.2024 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC5519_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 17.9 | 5.7e-06 | 108 | 133 | 7 | 32 |
HHHHHHHHHHHHHHHHHHCTSCCC.. CS
HLH 7 erErrRRdriNsafeeLrellPkask 32
++Err R+++N+++ Lr+++Pk+sk
RrC5519_p2 108 MAERRKRKKLNDRLYMLRSVVPKSSK 133
79*********************753 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MQRRMAEAQF SVAKDVEDND EKHKPSSQAL GYYIASQISP TPQAVDNYKL IIPMGFPREQ 60
AKKDNFVRFQ GGITSRSDEL NESNMGLRVF KMEEENVRRR ECLLKNLMAE RRKRKKLNDR 120
LYMLRSVVPK SSKSHNEFRL SDAPVSIRFA DGTASEELTD SGNSIPTEMF RFHSFDQLPI 180
DNYQQYQGHE ILLDRIKAVL SDTVGYAGMI CELIPSQSP
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 97 | 115 | RRRECLLKNLMAERRKRKK |
| 2 | 109 | 116 | ERRKRKKL |
| 3 | 111 | 115 | RKRKK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JN849373 | 5e-38 | JN849373.1 Isatis tinctoria cultivar Songlan 1 inducer of CBF expression 1 protein (ICE1) mRNA, complete cds. |
