PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5539_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 212aa    MW: 24594.7 Da    PI: 10.1699
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5539_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.21.4e-32131189159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H h+
  RrC5539_p2 131 LDDGYRWRKYGQKVVKNTQHPRSYYRCTQEKCRVKKRVERLADDPRMVITTYEGRHLHS 189
                 59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-34116189IPR003657WRKY domain
SuperFamilySSF1182901.23E-28124190IPR003657WRKY domain
PROSITE profilePS5081129.654126191IPR003657WRKY domain
SMARTSM007745.4E-37131190IPR003657WRKY domain
PfamPF031061.4E-25132188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MANLPETLIS ISSLSSPKHR DFHDSIVNLD HHRLTGGIIS SQRPSLDPWA WSSQAGYGYT  60
KKNNHVSEID DGVGEGGGIN DHQHHETPPR HKHTMKLLGV VPTLKMKKLK TRRKVREPRF  120
CFKTLSDVDI LDDGYRWRKY GQKVVKNTQH PRSYYRCTQE KCRVKKRVER LADDPRMVIT  180
TYEGRHLHSP SNHLDDDSHS SSHHSRLSNF FW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27122188874Probable WRKY transcription factor 4
2lex_A6e-27122188874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931580.0KM593158.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459481.11e-158PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB71e-108WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A3P6FDC91e-124A0A3P6FDC9_BRAOL; Uncharacterized protein
STRINGBo7g119200.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-81WRKY DNA-binding protein 13