PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5547_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 361aa    MW: 40507.1 Da    PI: 4.62
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5547_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ll+ +v ++G g+W+++ ++ g+ R++k+c++rw ++l
       RrC5547_p3 24 KGPWTPAEDQLLIAYVDKHGEGNWNAVQKHSGLSRCGKSCRLRWVNHL 71
                     79*******************************************996 PP
2Myb_DNA-binding43.38.7e-1477120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T  E++l +++++ +G++ W++ a+ ++ gRt++++k++w++
       RrC5547_p3  77 KGAFTDKEEQLVIELHASMGNK-WARMAAQLP-GRTDNEIKNFWNT 120
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9221975IPR017930Myb domain
SMARTSM007175.2E-162373IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-2923118IPR009057Homeodomain-like
PfamPF002494.1E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-242578IPR009057Homeodomain-like
CDDcd001675.44E-132671No hitNo description
SMARTSM007174.4E-1476124IPR001005SANT/Myb domain
PROSITE profilePS5129419.1976126IPR017930Myb domain
PfamPF002495.9E-1377120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2479124IPR009057Homeodomain-like
CDDcd001675.53E-1079122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGKVLRDDDF GSDQDVAIEK TFQKGPWTPA EDQLLIAYVD KHGEGNWNAV QKHSGLSRCG  60
KSCRLRWVNH LRPSLKKGAF TDKEEQLVIE LHASMGNKWA RMAAQLPGRT DNEIKNFWNT  120
RLKKLQRLGL PIYPDEVLEQ AMNASSQNGQ NSNSLDGTTT HHSQESLELD CLEIPEFDFK  180
YLQLDNCSSY YQSVLRNLPM GNIIGSPYMS PNRKRVREPE TDFLDTDGYA TNDEQSAQLW  240
DYPQFHVVPE TRLLGSDATY SFPPSEPEAE KLELPSFQCF DPPGDWERLL HSNPMPFVEM  300
SDSTLVQSPL TDCTSPGLLG SVVYGSSGEK QAANTDPESP LFQSSLFSHI ELTPAATANN  360
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30241247106B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765471e-127KR076547.1 Brassica napus MYB transcription factor 81-1 (MYB81-1.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438179.10.0PREDICTED: transcription factor MYB104-like
TrEMBLA0A142BX600.0A0A142BX60_BRANA; MYB transcription factor 81-1
STRINGBo4g076940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-121myb domain protein 81