PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC55_p12

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 149aa MW: 16641.9 Da PI: 8.2001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC55_p12	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	37	76	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++R d+ ++++ L++++ + +K + a++L+ A +YI L RrC55_p12 37 KQRKDKAGERISALQQIVSPY-----GKTDTASVLQDAFNYIEFL 76 788899999*******999.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.6E-9	27	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.995	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-11	36	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.80E-4	37	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEFSREAGMM MENKRSVCSL EESSIKRHKS DLSFTSKQRK DKAGERISAL QQIVSPYGKT 60 DTASVLQDAF NYIEFLHEQV KVLSAPYLQT MTAATQEELE LYSLRNRGLC LVPMEYTAGV 120 AQSNGADIWA PVKTPPSPAF GVKSQSPFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ576040	1e-154	AJ576040.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH-alpha gene).
GenBank	AK230257	1e-154	AK230257.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-23-B19.
GenBank	AY087858	1e-154	AY087858.1 Arabidopsis thaliana clone 3900 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451560.1	1e-106	PREDICTED: transcription factor bHLH113-like isoform X1
Refseq	XP_018451572.1	1e-106	PREDICTED: transcription factor bHLH113-like isoform X1
Swissprot	Q7XJU2	4e-94	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A397YKG1	1e-101	A0A397YKG1_BRACM; Uncharacterized protein
STRING	Bo8g005780.1	1e-101	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	2e-96	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]