PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5600_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 265aa    MW: 29214.5 Da    PI: 4.9779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5600_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-2097146255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g
  RrC5600_p1  97 KYRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAAIVYDNAAIQLRG 146
                 8********.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3096154IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-2297154IPR016177DNA-binding domain
SMARTSM003802.2E-3897160IPR001471AP2/ERF domain
CDDcd000182.30E-3397153No hitNo description
PROSITE profilePS5103223.86897154IPR001471AP2/ERF domain
PfamPF008474.9E-1397146IPR001471AP2/ERF domain
PRINTSPR003671.2E-1098109IPR001471AP2/ERF domain
PRINTSPR003671.2E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
METEKKVLKS MSTTTTTQPR ILRISVSDPY ATDSSSDEDE GFSEISGKRR RVKKFVNEVV  60
LESTVPDKDR PKKKKRPNMN TNTKTTAETA VTAPARKYRG VRQRPWGKWA AEIRDPSRRV  120
RLWLGTYDTA EEAAIVYDNA AIQLRGPNAL TNFSPPPPAT ESGEEASKVS DGECLGSPVS  180
VLQTPFSGES TAAITVKEEF YGVSTTAAVE VKEEPSITVS DTFTDFSSPL FLDDDVFGFS  240
TSMPDCFGDG ESNLRKCQRN DFTTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2193164170ATERF1
3gcc_A2e-2193164170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14751KRRRV
26874DRPKKKK
37076PKKKKRP
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474731.11e-158PREDICTED: ethylene-responsive transcription factor CRF1
SwissprotO825034e-91CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLA0A3P6AUH41e-134A0A3P6AUH4_BRAOL; Uncharacterized protein
STRINGBo3g045150.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.17e-83cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]