PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5604_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 244aa MW: 27228.8 Da PI: 9.9463

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5604_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	295.8	1.7e-90	1	244	58	301
GAGA_bind 58 maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqra 156 maflqrd+a+aern+a++erd++l al++++ s+as ++s +k+++++q +++ ++ +e+++ +++l +e+a+++ ++ k+ a RrC5604_p2 1 MAFLQRDTAIAERNNAVMERDSALSALQYRDSSMAS-------ASSAAKHMHHHQLQHHMLTS---YETNDGLLTSQLALESAKPKRGKRVGDPKTTAA 89 99*************************9988554.......55889999999997774332...222233333333333333333332222222222 PP GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesader........skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPv 246 +k +k+++k+kk++e++ ++ + + ++ sk++++s+++ ++n+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S++PLP+ RrC5604_p2 90 SKRGTKNQRKVKKEKEDDDLSKIMFVKTTNldygeeegSKSDWRSQEMvGINQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMHPLPA 188 22222223333332222222222222222244555566*****988********************************************* PP GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGy.dlsnpvDLkdhWAkHGtnkfvtir 301 +++++aR++grKmS++af+klL++Laa+G+ dls pvDLkdhWAkHGtn+++ti+ RrC5604_p2 189 LPNKKHARVGGRKMSGSAFNKLLSRLAAQGHrDLSDPVDLKDHWAKHGTNRYITIK 244 **************************879********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.3E-83	1	244	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.0E-88	1	244	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MAFLQRDTAI AERNNAVMER DSALSALQYR DSSMASASSA AKHMHHHQLQ HHMLTSYETN 60 DGLLTSQLAL ESAKPKRGKR VGDPKTTAAS KRGTKNQRKV KKEKEDDDLS KIMFVKTTNL 120 DYGEEEGSKS DWRSQEMVGI NQVVYDETTM PPPVCSCTGV LRQCYKWGNG GWQSSCCTTT 180 LSMHPLPALP NKKHARVGGR KMSGSAFNKL LSRLAAQGHR DLSDPVDLKD HWAKHGTNRY 240 ITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482411.1	1e-134	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_018482412.1	1e-134	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_018482413.1	1e-134	PREDICTED: protein BASIC PENTACYSTEINE6-like
Refseq	XP_018482414.1	1e-134	PREDICTED: protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-128	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	R0GR44	1e-130	R0GR44_9BRAS; Uncharacterized protein
STRING	XP_010481981.1	1e-131	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	1e-126	basic pentacysteine 6