PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5633_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 475aa MW: 55256.4 Da PI: 5.7331

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5633_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.3e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk+k++g ++el evi+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v ++ RrC5633_p1 6 LPPGFRFHPTDEELITYYLKRKINGLEIEL-EVIAEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRRVSW-RD 102 79**************************.99***********6345667999*********************************9.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kktLv+y+grap+g +t Wvmheyrl RrC5633_p1 103 RAIGTKKTLVYYRGRAPQGIRTGWVMHEYRL 133 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.133	6	157	IPR003441	NAC domain
Pfam	PF02365	2.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPQ 120 GIRTGWVMHE YRLDENECEP SAYGMQDAYA LCRVFKKIVI EAKTRDQHRS YIHAMSNVSG 180 TSSFDPCSDL EISLSTHQVQ NAFQPQFGNR RFNSNPSNEN WSQYYGSSYP PIPTPYKVNN 240 EIECSMLQHN ISLPPLRIDN SAVSNNNFYN TSTTHNNNHG VLEDFTFAAS NSNYYNNTVG 300 DQVIHIGNYD EPLITSNNYM NQVYIEEQKI ISTLDDNNQD HGFQGDNTNI NIHIDEYLSF 360 DMYNDENVNR VEGNEEDVNI NEAVDSSGFE VVEEEIRVNN RMLISTYQTT KILYHQVVPS 420 HTLKVHINHN VEEKILFIEE YKDSWVQRAE KTTKIKLTMI SLIAQQYYKY LTIFF

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSPVSLPPGF RFHPTDEELI TYYLKRKING LEIELEVIAE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRRVSW RDRAIGTKKT LVYYRGRAPQ  120
GIRTGWVMHE YRLDENECEP SAYGMQDAYA LCRVFKKIVI EAKTRDQHRS YIHAMSNVSG  180
TSSFDPCSDL EISLSTHQVQ NAFQPQFGNR RFNSNPSNEN WSQYYGSSYP PIPTPYKVNN  240
EIECSMLQHN ISLPPLRIDN SAVSNNNFYN TSTTHNNNHG VLEDFTFAAS NSNYYNNTVG  300
DQVIHIGNYD EPLITSNNYM NQVYIEEQKI ISTLDDNNQD HGFQGDNTNI NIHIDEYLSF  360
DMYNDENVNR VEGNEEDVNI NEAVDSSGFE VVEEEIRVNN RMLISTYQTT KILYHQVVPS  420
HTLKVHINHN VEEKILFIEE YKDSWVQRAE KTTKIKLTMI SLIAQQYYKY LTIFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	1	157	12	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-56	1	157	12	165	NAC domain-containing protein 19
4dul_B	2e-56	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489098.1	0.0	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	0.0	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	M4ET79	0.0	M4ET79_BRARP; Uncharacterized protein
STRING	Bra032009.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03200.1	0.0	NAC domain containing protein 45

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]