PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5633_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 56aa MW: 6035.1 Da PI: 11.0254

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5633_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.9	4.6e-12	15	52	2	39
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +ienk r +tf+k r g+ KA L+v da++a++ RrC5633_p4 15 KIENKASRATTFTKHRDGLYSKAAQLCVVSDAQIAILA 52 69*********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.493	6	56	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.5E-4	6	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-13	7	54	IPR002100	Transcription factor, MADS-box
CDD	cd00120	5.89E-14	7	56	No hit	No description
PRINTS	PR00404	6.1E-9	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-12	15	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-9	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-9	43	56	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 56 aa Download sequence Send to blast
MVKKGGTKRK PVMTKIENKA SRATTFTKHR DGLYSKAAQL CVVSDAQIAI LATPSS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477225.1	3e-29	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_018477620.1	7e-29	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_018477643.1	8e-29	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_018490867.1	6e-29	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	6e-16	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	A0A397YU64	9e-22	A0A397YU64_BRACM; Uncharacterized protein
TrEMBL	A0A3P5YBQ9	1e-21	A0A3P5YBQ9_BRACM; Uncharacterized protein
TrEMBL	M4DQD4	9e-22	M4DQD4_BRARP; Uncharacterized protein
STRING	Bra018727.1-P	2e-22	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49420.1	1e-19	M-type_MADS family protein

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]