PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5639_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 191aa MW: 21744.7 Da PI: 7.7121

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5639_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.9	1.1e-28	43	93	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+rWtpeLHe+Fveav++LGG ++A Pk++l++mkv+gLt++hvkSHLQ RrC5639_p3 43 KGRMRWTPELHEAFVEAVNHLGGMNNAKPKAVLKHMKVQGLTIYHVKSHLQ 93 56************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.115	40	98	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-15	42	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-26	42	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-20	43	95	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	45	93	IPR001005	SANT/Myb domain
Pfam	PF14379	7.0E-22	110	154	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
EPQVSLQQQP SPCVELQPLV RTVSSNSFTS NNNTASAASA AAKGRMRWTP ELHEAFVEAV 60 NHLGGMNNAK PKAVLKHMKV QGLTIYHVKS HLQLTPLEHV TSLDTKRGID ITEALRVQME 120 VQKQLHEQLE IQRKMQLRIE EQGKVLLMMF EKQNMDFRKP EQEDKTSERA PESCSDEEAD 180 SPRPKRPRNN E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-23	43	93	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	43	93	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	43	93	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	43	93	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452734.1	1e-111	PREDICTED: myb family transcription factor PHL4-like isoform X1
Refseq	XP_018452735.1	1e-111	PREDICTED: myb family transcription factor PHL4-like isoform X1
Swissprot	Q8GXC2	9e-77	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	M4F6G9	1e-105	M4F6G9_BRARP; Uncharacterized protein
STRING	Bra036679.1-P	1e-106	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	5e-77	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]