PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5657_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 224aa    MW: 24751.3 Da    PI: 4.6302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5657_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-193282155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+++++g
  RrC5657_p1 32 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALAIKG 82
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-133282IPR001471AP2/ERF domain
SMARTSM003806.3E-373396IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-223391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-323391IPR001471AP2/ERF domain
PROSITE profilePS5103223.1693390IPR001471AP2/ERF domain
CDDcd000181.23E-223492No hitNo description
PRINTSPR003678.6E-113445IPR001471AP2/ERF domain
PRINTSPR003678.6E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSTTDSVKQS SPVEEEHPRT NNNNKKRARP DPVYRGVRMR AWGKWVSEIR EPRKKSRIWL  60
GTFSTAEMAA RAHDAAALAI KGTSAVLNFP ELATYLPRPA SSSPRDVQAA AAVAAAMDFS  120
DPTTVVVPET QHLSPSSSYS TSTSSEEAAS STAEELSEIV ELPSLETSYD EPWSEFVYVD  180
SAYPPSSPWY FNNCYSFYYH SDENGTSMSE PFESANFGPL FPLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1834901572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042601e-103AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608751e-103AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026841e-103CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464371e-103DQ446437.1 Arabidopsis thaliana clone pENTR221-At1g77200 AP2 domain-containing transcription factor TINY (At1g77200) mRNA, complete cds.
GenBankDQ6529381e-103DQ652938.1 Arabidopsis thaliana clone 0000016559_0000011559 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459987.11e-125PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806541e-102ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLD7KUG71e-103D7KUG7_ARALL; Uncharacterized protein
STRINGXP_010471905.11e-106(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.12e-89ERF family protein