PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC573_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 237aa    MW: 27367.3 Da    PI: 6.6373
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC573_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.84.4e-3661382127
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                p+GfrF+Ptd+e+v++yLk k ++ +  +++evi++vdiy+++P +L  +   + ka+++++yfF+++  +y++g+r++r+tksg Wk+tg ++++++k 
  RrC573_p5   6 PVGFRFRPTDDEIVDHYLKSKNKDGNtSHVDEVISTVDIYSFDPLELAsQsssTRKATDNDLYFFCRK--EYNRGERQSRKTKSGSWKKTGVTTNIMRKr 103
                89*******************988874677788**************843444334466799****97..67789***********************98 PP

        NAM  96 .kgelvglkktLvfy..kgrapkgektdWvmheyr 127
                 ++e++g k+++vf   k       k+dWvmhey 
  RrC573_p5 104 gDREKIGEKRVFVFQysKILGGAKPKSDWVMHEYV 138
                87889*********844222333348********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-355140IPR003441NAC domain
PROSITE profilePS5100534.7565155IPR003441NAC domain
PfamPF023654.4E-236138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVDPHPVGFR FRPTDDEIVD HYLKSKNKDG NTSHVDEVIS TVDIYSFDPL ELASQSSSTR  60
KATDNDLYFF CRKEYNRGER QSRKTKSGSW KKTGVTTNIM RKRGDREKIG EKRVFVFQYS  120
KILGGAKPKS DWVMHEYVAT FVSLTQISSS ELHNPRQFTG FLHLEEETQI EDAIRRAINN  180
LSPHDLNCLL NNDYVDEEQG NTQEVSNALE TDTDTSEKKK INPYDDAQGK YDRSQKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-19613716138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639075.13e-88PREDICTED: NAC domain-containing protein 5-like
RefseqXP_022548551.14e-88NAC domain-containing protein 68-like
SwissprotO819141e-52NAC5_ARATH; NAC domain-containing protein 5
TrEMBLM4EWX17e-87M4EWX1_BRARP; Uncharacterized protein
STRINGBra033306.1-P1e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.14e-55NAC domain containing protein 5
Publications ? help Back to Top
  1. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]