PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC578_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14887 Da    PI: 10.1092
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC578_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.74.8e-211664250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               +++++s   +++  R+ +i+KKA+EL +LCd+e++vi ++++g+l++++
  RrC578_p3 16 SSSSYSLDATSLNSRLMTIFKKAQELTTLCDIEACVIHYGPDGELRTWP 64
               799*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.4472567IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-142799IPR002100Transcription factor, MADS-box
PfamPF003196.2E-112963IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MRSPRPYSCS KSSSSSSSSY SLDATSLNSR LMTIFKKAQE LTTLCDIEAC VIHYGPDGEL  60
RTWPENRDIV RDLALRYIQL DKAKKRKKSV NLYEFLNKMK TKNKKMTNNF KKEANRNVEE  120
LQESTLPSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479659.13e-56PREDICTED: agamous-like MADS-box protein AGL75, partial
SwissprotQ9FIX07e-31AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLA0A397ZSC11e-53A0A397ZSC1_BRACM; Uncharacterized protein
STRINGBra025619.1-P5e-51(Brassica rapa)
STRINGBo4g139560.13e-51(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.11e-31AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]