PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5791_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 226aa MW: 25976 Da PI: 7.6922

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5791_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	125.8	3.4e-39	5	132	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 +G+rF Ptdee+v++yL+ k +g + ++++vi++++i++++PwdLp ++++++++ wyfF +++ ky++g++++r+tksg+Wk+tg + +++k RrC5791_p3 5 VGLRFLPTDEEIVDHYLRLKNNGGSntSHVDQVISTLNICNFDPWDLPpkSRIESSNQVWYFFGRKEGKYKRGEQQKRQTKSGFWKKTGVTLLIKRKrg 103 7*****************9998866677789**********86448888999********************************99977 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g k++Lvfy ++g k++Wvmhey+ RrC5791_p3 104 NREKIGEKRVLVFY----KNGYKSNWVMHEYHH 132 7888******....7899*******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.428	3	152	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-40	4	152	IPR003441	NAC domain
Pfam	PF02365	3.3E-23	5	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MENMVGLRFL PTDEEIVDHY LRLKNNGGSN TSHVDQVIST LNICNFDPWD LPPKSRIESS 60 NQVWYFFGRK EGKYKRGEQQ KRQTKSGFWK KTGVTLLIKR KRGNREKIGE KRVLVFYKNG 120 YKSNWVMHEY HHTSFLYPNE SGKYTICKVQ FKGEVSEISS SSGVDNVENS HSLATPTNNP 180 GGSEGLQNSS QFSGFLDHQQ EMQFEAETQI DFNDLLSYDL ESLLAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	6	149	20	162	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	6	149	20	162	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	6	149	20	162	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	6	149	20	162	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	6	149	23	165	NAC domain-containing protein 19
3swm_B	2e-21	6	149	23	165	NAC domain-containing protein 19
3swm_C	2e-21	6	149	23	165	NAC domain-containing protein 19
3swm_D	2e-21	6	149	23	165	NAC domain-containing protein 19
3swp_A	2e-21	6	149	23	165	NAC domain-containing protein 19
3swp_B	2e-21	6	149	23	165	NAC domain-containing protein 19
3swp_C	2e-21	6	149	23	165	NAC domain-containing protein 19
3swp_D	2e-21	6	149	23	165	NAC domain-containing protein 19
4dul_A	2e-21	6	149	20	162	NAC domain-containing protein 19
4dul_B	2e-21	6	149	20	162	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00122	DAP	Transfer from AT1G02230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490136.1	1e-152	PREDICTED: NAC domain-containing protein 5-like
Swissprot	O81913	5e-78	NAC4_ARATH; NAC domain-containing protein 4
Swissprot	O81914	7e-78	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A078J0S1	1e-125	A0A078J0S1_BRANA; BnaC08g49770D protein
STRING	Bo8g117570.1	1e-117	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	6e-75	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]