PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC579_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 1002aa    MW: 111402 Da    PI: 6.2238
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC579_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11697.2e-53121273117
       CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                +e k+rwlk+ e++ iL+n+e++elt++++++p+sgsl L+n++++++frkDG++wkkk+dg+++ E+he+LKvg+ve+l+cyYah+e++p+fqrr++w+
  RrC579_p1  12 QEaKTRWLKPPEVYFILKNHERYELTHKAPHKPTSGSLYLFNKRVLKFFRKDGHQWKKKRDGRAIAEAHERLKVGNVEALNCYYAHGEHDPSFQRRIFWM 111
                6669************************************************************************************************ PP

       CG-1 102 Leeelekivlvhylev 117
                L+ e+++ivlvhy++v
  RrC579_p1 112 LNLEYDHIVLVHYRDV 127
                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.0117133IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4413127IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.08E-17464548IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.2E-8464549IPR013783Immunoglobulin-like fold
CDDcd001027.31E-7464549No hitNo description
PfamPF018338.5E-10464547IPR002909IPT domain
Gene3DG3DSA:1.25.40.203.4E-15635734IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.388637729IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.31E-15639735IPR020683Ankyrin repeat-containing domain
CDDcd002044.95E-13657729No hitNo description
PfamPF127962.9E-7658731IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0049670699IPR002110Ankyrin repeat
PROSITE profilePS5008810.953670702IPR002110Ankyrin repeat
SMARTSM002481500709738IPR002110Ankyrin repeat
SuperFamilySSF525402.1E-11783882IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001543783805IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.766784812IPR000048IQ motif, EF-hand binding site
SMARTSM000150.51830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261831857IPR000048IQ motif, EF-hand binding site
PfamPF006120.0043832851IPR000048IQ motif, EF-hand binding site
SMARTSM000152.0E-4853875IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.553854878IPR000048IQ motif, EF-hand binding site
PfamPF006121.9E-5856875IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MQSEYEISTL SQEAKTRWLK PPEVYFILKN HERYELTHKA PHKPTSGSLY LFNKRVLKFF  60
RKDGHQWKKK RDGRAIAEAH ERLKVGNVEA LNCYYAHGEH DPSFQRRIFW MLNLEYDHIV  120
LVHYRDVSDG NEGRQSSGTV LQFSLNPNTL FSSPSYNHHH HIGESSTDIQ QQQQSSTSLG  180
IAEANSGVVF NSSNSGGEEG SGSSYEIENR EAFRRLEEQL SLDDDNVFNA TDPLESLDGL  240
QLIDFSTDTD YRVPPATVHQ RPESSSKLGR CCAGYVGPQY DNVVPPLLYS QNESLDSLLS  300
LEYVKDMSHL AQPAAGHQRP ESNRLDRSNG GYFGVEHHHP NSLMLVNNDS GGSGGSGDQK  360
FDSWKDVLET CGASTALNSE GSTPSPAKGL LPGMQGDSNW TYSNQLDQAT LLLPQQLGSS  420
LQLPACYSEM GAPEINGDYS RMMNEEGQTE QEMNHTVACK QKFTIEDISP KWGYANETTK  480
VIIIGSFLCD PTESTWACMF GNDEVPFEII KEGVIRCQAP PCGPGKVNLC ITCGDGLSCS  540
QIKEFEYRDK CRSSPDELLL LVRFVQTLLS DRKSNLEAST VDDEWSRIIE KIRDGTATST  600
STVDWLLQEL LKDKLDAWLS SRSQDKDQTS CCSLSKKEQG IIHMVAGLGF DWALSPILGH  660
GVNVDFRDSK GRSALHWAAQ LGSEKMVSAL IASGASPGAV TDPNTQDPIG KTPASIAASN  720
GHKGLAGYLS EAALTNHLSS LTLEETEDSK DTAQAKAEKK VNSITGRGHP VNDDPQSLAA  780
LKNAAQAAER IQAAFRAHSF RKRQQREAAR HTFWKEYGIY ADMSSPNARN YHSAALSIQK  840
KYRGYKGRKE FLTKREKAVI IQAHVRGYQT RKQYKVICWA VGVLDKVILR WRRKGVGLKG  900
FRQDVESGGE ESEDEDILRV FRKQKVDGAV NEAFSRVLSM TRSQESRQQY HRVLTGYCKK  960
KAELGKTETL GTGGSGGGYE EDDDDALFDI ADMEYDNLFA LP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446387.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A397YZ200.0A0A397YZ20_BRACM; Uncharacterized protein
STRINGBo6g099030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]