PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC585_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 279aa MW: 31310.3 Da PI: 9.7742

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC585_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	343.1	6.8e-105	1	279	1	301
GAGA_bind 1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdnkllalllve 88 mdddg+ rn+gyyepa +++k nlglqlmss +r++k+ r+ nl +++++++++++ m++ +++++ +++k++++l+v+ RrC585_p1 1 MDDDGF--RNWGYYEPAaaTTFKGNLGLQLMSSA-DRNTKPflpgRDPNL-MMSQNGSYHHHHseppihMSY----NWINQ-------QKDKFFNMLPVT 85 9999..9**99889*********9.9**********.888888888887788888888....9.......899***99 PP GAGA_bind 89 nslasalpvgvqvlsgtksidslqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaders 187 ++ p++ ++l++t+s+ s+++ +++q+e+++v+ +eee+ +++p ++k+k++++++a ++k kk +k+k+ ++++k++ +r+ RrC585_p1 86 TT-----PNYGNALPETSSAPSMHHhYHHHQTEENPVKCEEEEEETVQP--------NKKRKTNSKASAPTTKGKKPRKPKE-----ENDSKSDV--SRV 165 86.....99********9999567799999999966655333333........2222222234455566666666666.....23444444..789 PP GAGA_bind 188 kaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287 k kks+dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekL+++G++++ p+DLk+ RrC585_p1 166 KPAKKSVDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLSSDGFNFGSPIDLKS 265 ************************************************************************************************ PP GAGA_bind 288 hWAkHGtnkfvtir 301 hWA+HGtnkfvtir RrC585_p1 266 HWARHGTNKFVTIR 279 ***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.0E-166	1	279	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.6E-98	1	279	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDDDGFRNWG YYEPAAATTF KGNLGLQLMS SADRNTKPFL PGRDPNLMMS QNGSYHHHHS 60 EPPIHMSYNW INQQKDKFFN MLPVTTTPNY GNALPETSSA PSMHHHYHHH QTEENPVKCE 120 EEEEETVQPN KKRKTNSKAS APTTKGKKPR KPKEENDSKS DVSRVKPAKK SVDLVINGVN 180 MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ 240 GAFKKVLEKL SSDGFNFGSP IDLKSHWARH GTNKFVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018462952.1	0.0	PREDICTED: LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE2-like
Swissprot	Q9LDE2	1e-164	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A3P6GGC7	0.0	A0A3P6GGC7_BRAOL; Uncharacterized protein
STRING	Bo8g066170.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-160	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]