PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5875_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 179aa    MW: 20985.7 Da    PI: 7.322
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5875_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.9e-1163108550
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                 ++ +rk +NRe+A+rsR +K++++ee   k  +L+ eN++L++++ 
  RrC5875_p1  63 RKKKRKLSNRESAKRSRVKKQKYLEEMNIKLNQLKIENRDLQNQIG 108
                 6899*************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-1057108No hitNo description
SMARTSM003382.1E-1259123IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.64561124IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-1063113No hitNo description
PfamPF001703.5E-963110IPR004827Basic-leucine zipper domain
CDDcd147025.52E-1764115No hitNo description
PROSITE patternPS0003606681IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MMSTISPVFS CEPGQTTHVP AFETGFTPWD ISHLFSAHEY LSPDSVNLYG PDAVPTDSYT  60
DERKKKRKLS NRESAKRSRV KKQKYLEEMN IKLNQLKIEN RDLQNQIGYV LHHFQRTETE  120
NNRLRLEQRM LHSTLLNITQ VLMLHQIDRS SDCVTWPYDD STRVTVQHDP YVITDHIIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16168ERKKKRKL
26283RKKKRKLSNRESAKRSRVKKQK
36368KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438447.11e-128PREDICTED: bZIP transcription factor 2
TrEMBLA0A397XZ971e-108A0A397XZ97_BRACM; Uncharacterized protein
STRINGBra036025.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.12e-63basic leucine-zipper 5