PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC589_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 145aa    MW: 16052.8 Da    PI: 10.3781
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC589_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260651.8e-201878160
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamss 60
               +C aCk+lrrkC+++Cv+apyf +eq + +fa++ ++FGasn +k+l +lp ++r da+++
  RrC589_p7 18 PCGACKFLRRKCVRGCVFAPYFDSEQgTVSFAAIYRVFGASNTSKMLLRLPLHKRLDAVAT 78
               7***********************9988***************************888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.91417125IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-181879IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MMTENLNGGG RGEGGEGPCG ACKFLRRKCV RGCVFAPYFD SEQGTVSFAA IYRVFGASNT  60
SKMLLRLPLH KRLDAVATSV TRLCLSSVIL FTAALAISSL FNTRSFIKHY VMNLQAEIAH  120
VQARLSMFQR FYLVPPRQMQ QPPSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-201478770LOB family transfactor Ramosa2.1
5ly0_B1e-201478770LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894983e-97AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.14e-59PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.14e-59PREDICTED: LOB domain-containing protein 19-like
SwissprotO221323e-46LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A087H5D21e-47A0A087H5D2_ARAAL; Uncharacterized protein
TrEMBLA0A0D3BQ337e-48A0A0D3BQ33_BRAOL; Uncharacterized protein
STRINGBo4g024610.11e-48(Brassica oleracea)
STRINGA0A087H5D22e-48(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3777222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-49LOB domain-containing protein 19