PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5917_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 269aa    MW: 30947 Da    PI: 4.5927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5917_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.81e-19261784128
         NAM   4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra....tksgyWka 85 
                 G+ F+P+d+el++ +L +k+e+ +       e+e++i+  ++y+ ePw L++ +++   +++ew++F++r++ +     +g++++r      + g Wk 
  RrC5917_p1  26 GIYFNPEDQELIKLHLLPKLETYRkpkskdEECEDFIEMKNVYDKEPWLLDH-TNHplfRKNEWFYFVTRSQVSVknigRGRNSKRRvngdNDGGSWKP 123
                 99*****************998876666655556689999**********84.222345889*****999988773344344444432333559****9 PP

         NAM  86 tgkdkevlsk.kgelvglkktLvfy...kgrapkge............ktdWvmheyrl 128
                   k k + ++ +ge++g k+tL f    k   +k +            +++W+mhey+l
  RrC5917_p1 124 NAK-KYIEDEeTGETIGKKQTLKFTksdK---KKQKrgdgtsvvvpgsNSSWIMHEYSL 178
                 988.56665559999**********5542...322222344555555599*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.44623195IPR003441NAC domain
SuperFamilySSF1019411.83E-2425193IPR003441NAC domain
PfamPF023653.9E-1526178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSNNYEDGGV YYDPDENMFN NDEDGGIYFN PEDQELIKLH LLPKLETYRK PKSKDEECED  60
FIEMKNVYDK EPWLLDHTNH PLFRKNEWFY FVTRSQVSVK NIGRGRNSKR RVNGDNDGGS  120
WKPNAKKYIE DEETGETIGK KQTLKFTKSD KKKQKRGDGT SVVVPGSNSS WIMHEYSLPD  180
ENTFQELVLC KIRKISNSKD EDDHHNVVED GSIGDLSDKL ASTGLDDRQQ TLIYAAPPAT  240
PGDRSLPIDV DKSDDDDEVM NQELDTHLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465913.11e-152PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A3P6D1C71e-148A0A3P6D1C7_BRAOL; Uncharacterized protein
STRINGBo2g027110.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.19e-17NAC domain containing protein 88