PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC591_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31668.1 Da    PI: 9.7509
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC591_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.61.9e-29959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  RrC591_p2  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
               79***********************************************96 PP
2K-box58.52.8e-2083158984
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                ++++++++ ++e++ Lk+ei++Lq+++ +l+G+ L++Lslk+Lq+LeqqL+ sl ++R++K+ ll++q+ee++ k 
  RrC591_p2  83 NCKTENQEESTEVDLLKDEISKLQEKHLQLKGKRLNTLSLKQLQHLEQQLNVSLISVRERKELLLTKQLEESRLKI 158
                688999******************************************************************9884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.786161IPR002100Transcription factor, MADS-box
CDDcd002659.24E-42277No hitNo description
SuperFamilySSF554551.57E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1386182IPR002487Transcription factor, K-box
PROSITE profilePS5129712.78488188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSSS  60
RCMKKTLLRY GNYQIPSDVA GINCKTENQE ESTEVDLLKD EISKLQEKHL QLKGKRLNTL  120
SLKQLQHLEQ QLNVSLISVR ERKELLLTKQ LEESRLKIFQ ITFKLLQQQR AELENETLRR  180
QVQELRSFLP SINQQHYAPS YIRCFTIDPK SSLLNNTCYR DINCSLLQNT NSDTTLQLGL  240
PGEAHDTRKN EGDRESPSSD SVTTSTTRAS AQRISLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22178177MEF2 CHIMERA
6byy_B1e-22178177MEF2 CHIMERA
6byy_C1e-22178177MEF2 CHIMERA
6byy_D1e-22178177MEF2 CHIMERA
6bz1_A1e-22178177MEF2 CHIMERA
6bz1_B1e-22178177MEF2 CHIMERA
6bz1_C1e-22178177MEF2 CHIMERA
6bz1_D1e-22178177MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475144.11e-171PREDICTED: agamous-like MADS-box protein AGL15 isoform X3
SwissprotQ392951e-158AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A3P5ZVI21e-161A0A3P5ZVI2_BRACM; Uncharacterized protein
STRINGBo3g009340.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-117AGAMOUS-like 15