PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5951_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18946.1 Da    PI: 10.1021
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5951_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.41.4e-161050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i++ks r vtf kR++gilKK +EL +LC+ +++ ii+s 
  RrC5951_p2 10 LISDKSTRRVTFRKRKEGILKKINELTILCGLRACAIIYSD 50
                59*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-21184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.955150IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-18160IPR002100Transcription factor, MADS-box
CDDcd002661.03E-21285No hitNo description
PRINTSPR004047.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVTHEL ISDKSTRRVT FRKRKEGILK KINELTILCG LRACAIIYSD YKDGPEVWPN  60
RREVRVLLNR FSALPKEKQT KYMMDQKDLM TRMIQDAEKK LEKEQMHSRA MELGMIAAFS  120
DLDDADYSED LIKAADVVEK RISVIRQRIE ALESRTALVK KD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHELISDKSTRRVTFRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438360.11e-115PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A078GKE81e-105A0A078GKE8_BRANA; BnaA07g10380D protein
TrEMBLA0A397YS611e-105A0A397YS61_BRACM; Uncharacterized protein
STRINGBra012335.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.29e-84AGAMOUS-like 87