PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC59920_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YB

Protein Properties

Length: 121aa MW: 12699.8 Da PI: 5.1573

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC59920_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	122.6	1.6e-38	1	65	33	97
NF-YB 33 etvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 etvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfedyveplk+yl+kyre+ege+ RrC59920_p1 1 ETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYREVEGER 65 79*************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.2E-13	1	39	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.9E-34	1	77	IPR009072	Histone-fold
SuperFamily	SSF47113	3.59E-26	2	70	IPR009072	Histone-fold
PRINTS	PR00615	3.0E-22	3	21	No hit	No description
PROSITE pattern	PS00685	0	6	22	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.0E-22	22	40	No hit	No description
PRINTS	PR00615	3.0E-22	41	59	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
ETVQECVSEF ISFVTGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP LKIYLQKYRE 60 VEGERTTTTT TGRQGDKEGG GGGNGSSSSG GGVGGGGGYS ATTGGGMYGG IVTMGHHHQG 120 H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	5e-31	1	60	34	93	NF-YB
4awl_B	6e-31	1	60	35	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	6e-31	1	60	35	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189218	1e-109	AC189218.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432710.1	6e-81	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	9e-49	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	A0A1J3G450	2e-56	A0A1J3G450_NOCCA; Nuclear transcription factor Y subunit B-3 (Fragment)
STRING	XP_006406899.1	3e-53	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-43	nuclear factor Y, subunit B3

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]