PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC60080_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 90aa MW: 9743.83 Da PI: 9.1187

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC60080_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7e-06	38	75	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL+ RrC60080_p1 38 RREMKKMMGVLRRIVPGG-----EEMNTASVLDEAVQYLKSLK 75 889999********95.....69**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.236	25	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-7	38	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-8	38	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.93E-5	38	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
DGGDSEEVRS TARNSSYGYN KQSLSGSASS CNNEGKGRRE MKKMMGVLRR IVPGGEEMNT 60 ASVLDEAVQY LKSLKLEAQK LGVGHFSNQS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC008030	7e-75	AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBank	AC022455	7e-75	AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBank	AF361607	7e-75	AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	AK230374	7e-75	AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBank	AK318702	7e-75	AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBank	AY074843	7e-75	AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBank	CP002684	7e-75	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499513.2	3e-39	PREDICTED: transcription factor bHLH144-like
Refseq	XP_013650577.1	2e-40	transcription factor bHLH144-like
Swissprot	Q9ASX9	8e-24	BH144_ARATH; Transcription factor bHLH144
TrEMBL	A0A397YJ46	1e-37	A0A397YJ46_BRACM; Uncharacterized protein
TrEMBL	M4EN14	1e-37	M4EN14_BRARP; Uncharacterized protein
STRING	Bra030184.1-P	2e-38	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6195	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	3e-26	bHLH family protein

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]