PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6034_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 271aa    MW: 30372.6 Da    PI: 10.1951
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6034_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind338.61.6e-10312711301
   GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllvens 90 
                 mdddg+  rn+gyyepa  +s+k nlglqlm +i +r++k+    r+ nl ++++ ++++++    m++    +++++       +++k++++l+v+++
  RrC6034_p2   1 MDDDGF--RNWGYYEPAaaTSFKGNLGLQLMPTI-DRNTKPflpgRDPNL-MIGQTGSYHHHPephMSY----NWINQ-------HKDKFFNMLPVTTT 84 
                 99**99..9******99899**************.9**************.**********99555666....*****.......789*******9986 PP

   GAGA_bind  91 lasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                      p++ +vl++t+s  s+++    +l+      ++++++e++p++++++ +++kk+k +++ +  +k+kk +k+k+++       +++   +r+k 
  RrC6034_p2  85 -----PNYGNVLPQTSSSPSMHM----NLH------HHHHQTEEHPVKCEPDIVETKKRKPNSKAGGATKAKKPRKPKEEN-------DTSV--SRVKP 159
                 .....9***************99....332......245667788999999999999998888999999999999999833.......3333..57999 PP

   GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdh 288
                  kks dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+LekLa++G++++np+DLk+h
  RrC6034_p2 160 AKKSFDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSH 258
                 *************************************************************************************************** PP

   GAGA_bind 289 WAkHGtnkfvtir 301
                 WA+HGtnkfvtir
  RrC6034_p2 259 WARHGTNKFVTIR 271
                 ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.3E-1621271IPR010409GAGA-binding transcriptional activator
PfamPF062174.9E-941271IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATSF KGNLGLQLMP TIDRNTKPFL PGRDPNLMIG QTGSYHHHPE  60
PHMSYNWINQ HKDKFFNMLP VTTTPNYGNV LPQTSSSPSM HMNLHHHHHQ TEEHPVKCEP  120
DIVETKKRKP NSKAGGATKA KKPRKPKEEN DTSVSRVKPA KKSFDLVING VNMDISGLPV  180
PVCTCTGAPQ QCYRWGCGGW QSACCTTNIS MHPLPMSTKR RGARISGRKM SQGAFKKVLE  240
KLASDGFNFG NPIDLKSHWA RHGTNKFVTI R
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433121.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_018433122.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-163BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P5Y9300.0A0A3P5Y930_BRACM; Uncharacterized protein
STRINGBo8g106640.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-154basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]