PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6041_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 296aa    MW: 34301.8 Da    PI: 8.7712
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6041_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-1772117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia++++ gR++k+c++rw++ 
       RrC6041_p1  72 RGHWRPAEDAKLKELVALYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 117
                      899*****************************.***********996 PP
2Myb_DNA-binding56.18.2e-18124167146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e l +a++++G++ W+ Iar ++ gRt++++k++w+ 
       RrC6041_p1 124 RKAFSEEEEEMLMQAHNLYGNK-WAMIARLFP-GRTDNSVKNHWHV 167
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.60367118IPR017930Myb domain
SuperFamilySSF466892.71E-2971165IPR009057Homeodomain-like
SMARTSM007171.8E-1471120IPR001005SANT/Myb domain
PfamPF002491.4E-1672117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2673125IPR009057Homeodomain-like
CDDcd001677.04E-1375116No hitNo description
PROSITE profilePS5129424.821119173IPR017930Myb domain
SMARTSM007173.6E-15123171IPR001005SANT/Myb domain
PfamPF002494.9E-15124166IPR001005SANT/Myb domain
CDDcd001671.72E-11126166No hitNo description
Gene3DG3DSA:1.10.10.602.4E-21126172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSEDHRRWMD QIASSDYFSF DISSYQHSGH YYASHREEVI KSPNQSNNGN CSKKETRVCG  60
NFRHSSKASA ARGHWRPAED AKLKELVALY GPQNWNLIAE KLQGRSGKSC RLRWFNQLDP  120
RINRKAFSEE EEEMLMQAHN LYGNKWAMIA RLFPGRTDNS VKNHWHVIMA RKFREQSSVY  180
RRRKTLIPLK PLVNPSPLSC NGFDPTRSDM IHLVSNDQNH LMLPIPCFPG YAHENESPLM  240
LGMLQNQMMV DDYSARTREA TTFDFLNQTE KCEMLGEGMN EQKKPHFIDF LGLGTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-33711736108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590777.10.0PREDICTED: transcription factor MYB75
RefseqXP_013694796.20.0transcription factor MYB105-like
SwissprotQ9SEZ41e-157MY105_ARATH; Transcription factor MYB105
TrEMBLA0A3N6QQZ00.0A0A3N6QQZ0_BRACR; Uncharacterized protein
STRINGBo6g095400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-152myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]