PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6041_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 391aa MW: 43402 Da PI: 9.2797

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6041_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.4e-38	126	185	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s+ntkfCyynny++sqPryfC++C+ryWt+GG++rnvPvG+grrknk + RrC6041_p2 126 PDKILPCPRCESANTKFCYYNNYNVSQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 185 7899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	123	183	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-32	128	183	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MSKSRDTEIK LFGRTITSLV AVNHYDPSPL SAAHGGSDHR KEASSSSSSS CSPSIRPDSV 60 LADKNEKENS RFKDPYTLSQ VNEPPKAASE ILSPISSKTN TDQQSEITTT TTSTSAADKH 120 TTLKKPDKIL PCPRCESANT KFCYYNNYNV SQPRYFCRNC QRYWTAGGSM RNVPVGSGRR 180 KNKGWPSSNH YLQVTSEDYE NNNNNSGTIL SFGSLESSVT ETGKHQPGDT KIISDSASQE 240 QKPRQGFLPP QVMFANNSSP WPYNQWSPTG PNANFYPVPF YWGCTVPIWP TSETPPCLGK 300 RSRDQTEGGI KEATTITTSR LVSETLSIKE ANKTAVWSTK PERKTEGFSL FDGFETKRRN 360 GRSLVPETSI NLQANPAAMS RSMNFRENMQ Q

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MSKSRDTEIK LFGRTITSLV AVNHYDPSPL SAAHGGSDHR KEASSSSSSS CSPSIRPDSV  60
LADKNEKENS RFKDPYTLSQ VNEPPKAASE ILSPISSKTN TDQQSEITTT TTSTSAADKH  120
TTLKKPDKIL PCPRCESANT KFCYYNNYNV SQPRYFCRNC QRYWTAGGSM RNVPVGSGRR  180
KNKGWPSSNH YLQVTSEDYE NNNNNSGTIL SFGSLESSVT ETGKHQPGDT KIISDSASQE  240
QKPRQGFLPP QVMFANNSSP WPYNQWSPTG PNANFYPVPF YWGCTVPIWP TSETPPCLGK  300
RSRDQTEGGI KEATTITTSR LVSETLSIKE ANKTAVWSTK PERKTEGFSL FDGFETKRRN  360
GRSLVPETSI NLQANPAAMS RSMNFRENMQ Q

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442819.1	0.0	PREDICTED: cyclic dof factor 5-like
Refseq	XP_018442840.1	0.0	PREDICTED: cyclic dof factor 5-like
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A0D3CXN1	0.0	A0A0D3CXN1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6HBJ4	0.0	A0A3P6HBJ4_BRAOL; Uncharacterized protein
STRING	Bo6g095390.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]