PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6044_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 202aa    MW: 23727.8 Da    PI: 9.937
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6044_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-1174163382
                 EE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
          B3   3 kvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                 k+lt+sdv k  +rl+l+k  ++++            gk  e++ ++++ ++g++ e+ +++++ +   vl +GW++Fvk+ +L    Df++ 
  RrC6044_p4  74 KQLTKSDVKKDqNRLMLSKAQVDKNflplfeesdtlLGK--EGTRVSVYGPDGKVREMMFKMWNEKT-PVLMSGWNKFVKEYKLSmYCDFLTV 163
                 89*******9989****************9988875223..5679********88888777799985.56777***********844576653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037542.9E-672151IPR005508B3 domain-containing protein
SMARTSM010192.0E-772178IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-1473177IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-1274178No hitNo description
Gene3DG3DSA:2.40.330.109.7E-1574160IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVTAAFALTH FMFLRDRIQA DDRENNPSKK RKIIKKDDTE ETLELLLRWT SDPPKNLPEA  60
TMAVLGRCSK PIWKQLTKSD VKKDQNRLML SKAQVDKNFL PLFEESDTLL GKEGTRVSVY  120
GPDGKVREMM FKMWNEKTPV LMSGWNKFVK EYKLSMYCDF LTVLMFMHKE TREICVAIDF  180
TRHPIVKRLS ERISKIVFKV ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893060.0AC189306.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB032C14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467210.11e-136PREDICTED: putative B3 domain-containing protein At4g03160
SwissprotQ9ZR144e-39Y4317_ARATH; Putative B3 domain-containing protein At4g03170
TrEMBLM4C7H01e-120M4C7H0_BRARP; Uncharacterized protein
STRINGBra000148.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-40B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]