PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC604_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 177aa MW: 19568.3 Da PI: 6.7363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC604_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	60.8	3.7e-19	7	93	1	76
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGa 76 +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++ p +r ++s +++ A + P +++ RrC604_p1 7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISNPlfmtavkpyePSLTRLSLVSMILFTAASPKSSPSSNS 93 7*********************9979***************987643333333332222256666666666666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.839	6	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-17	7	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISNPLFMT 60 AVKPYEPSLT RLSLVSMILF TAASPKSSPS SNSLQAQVVL LREEASRKFP REDCMEQGKV 120 LGQDMPQDLH SWFHQVVSDS NLNQMSDVAS TSMVRNESFC SSSESLYYPE AMFPWSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-18	3	120	7	122	LOB family transfactor Ramosa2.1
5ly0_B	5e-18	3	120	7	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473850	1e-118	AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438632.1	2e-93	PREDICTED: LOB domain-containing protein 14-like
Swissprot	Q9SJW5	1e-66	LBD14_ARATH; LOB domain-containing protein 14
TrEMBL	A0A078FFC4	2e-89	A0A078FFC4_BRANA; BnaA05g11430D protein
TrEMBL	A0A291LR54	2e-89	A0A291LR54_BRARR; Transcription factor LBD14
STRING	Bra018260.1-P	5e-88	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31310.1	6e-67	LOB domain-containing protein 14

Publications ? help Back to Top
Jeon E, et al. LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis. Plant Cell Physiol., 2017. 58(12): p. 2190-2201 [PMID:29040694]