PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC604_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 295aa    MW: 32383 Da    PI: 6.0883
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC604_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-10199257563
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+     l+ e+
  RrC604_p7 199 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVEN 257
                9********************************************99998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.2E-15195259IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565197260IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10199250No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-11199253No hitNo description
PfamPF001705.8E-9199251IPR004827Basic-leucine zipper domain
CDDcd147035.49E-22200249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDREKSPAPS GGLPPPSPGP INHGSESNRL SHDMSRMLEH PPKKIGHRRA HSEILTLPDD  60
LSFDSDLGVV GGGANNADGA SFSDDTEEDL LSMYLDMDKF NSSTATSSSA AAAAGQVGEP  120
SWKNESVMMM QHHTGSSSNN PQNSFGERPR VRHQHSHSMD GSLNMSEMLV SGDGDDSVVD  180
AKKSMSAAKL AELALIDPKR AKRIWANRQS AARSKERKTR YIFELERKVQ TLQTEATTLS  240
AQLTLLQRDT NGLTVENNEL KLRLQTMEQQ VHLQDELNEA LKEEIQHLKG TGVVY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532831e-165AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439833.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-167POF21_ARATH; Probable transcription factor PosF21
TrEMBLE4MXN61e-166E4MXN6_EUTHA; mRNA, clone: RTFL01-24-D07
TrEMBLV4M9E91e-166V4M9E9_EUTSA; Uncharacterized protein
STRINGXP_006410269.11e-167(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.51e-124bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]