PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC604_p8

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

DBB

Protein Properties

Length: 246aa MW: 27518.9 Da PI: 4.6072

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC604_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.3e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++l C ++ lC++C + H H+ RrC604_p8 4 QCDVCEKAPATLICCADEAALCAKCDVDVHAAnklaskHQ 43 7**************************9995556666665 PP
2	zf-B_box	26.8	1.1e-08	55	86	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ + ek + +fC +++ llC+dC + +H RrC604_p8 55 PPCDICLEKAAFIFCVEDRALLCRDCDEGTHA 86 68*****************************4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.271	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.50E-7	3	47	No hit	No description
SMART	SM00336	2.6E-9	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.0E-5	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-13	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.001	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.6E-7	55	95	IPR000315	B-box-type zinc finger
CDD	cd00021	3.56E-7	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010100	Biological Process	negative regulation of photomorphogenesis
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKIQCDVCEK APATLICCAD EAALCAKCDV DVHAANKLAS KHQRLFLDSL STKFPPCDIC 60 LEKAAFIFCV EDRALLCRDC DEGTHAPNTR SANHQRFLAT GIRVALSSTS CSKEVEMNHF 120 DPSNQQILSE PPAQQPVAPS PPWTGDEFFS YSDLEYSNKQ KEQLDIGELD WLAEMGFLGD 180 QPDDQEALPA AEVPELSVSH LAHVHSYNRP MNPNVSNKKP RLEIRYDDEE EHFLVPDLGL 240 NYGRRN

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:23624715}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352961	0.0	AK352961.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-E05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439835.1	1e-177	PREDICTED: B-box zinc finger protein 25 isoform X1
Swissprot	Q9SID1	1e-156	BBX25_ARATH; B-box zinc finger protein 25
TrEMBL	A0A078F8L1	1e-164	A0A078F8L1_BRANA; BnaA05g11360D protein
STRING	Bra018249.1-P	1e-164	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2711	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31380.1	1e-149	salt tolerance homologue

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]