PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6079_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 207aa MW: 23569.9 Da PI: 7.8025

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6079_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.8	1.1e-21	51	99	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+++ +rqvtfskRr+g++KKA ELSvLC a++ +i fs +++y + RrC6079_p1 51 KEIKEENRRQVTFSKRRTGLFKKAAELSVLCCAQIGIITFSRCDRVYSF 99 6799******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.656	43	103	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-24	43	102	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.24E-22	44	116	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-19	45	65	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-21	53	99	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-19	65	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-19	80	101	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MENGEATPTP CLLSTEQKPM PTTPNLGKKQ RKERKVQNPK TTKGRQRIEI KEIKEENRRQ 60 VTFSKRRTGL FKKAAELSVL CCAQIGIITF SRCDRVYSFG NVGTLTEKYL RKSPVTLRSK 120 LGDDVALEGD GGSMWWEREV ESVPEEEMEE YVKGLSGLRE NLWTRICELG GDPTVQMNAQ 180 AFPDLMAPVD WKMVDENLTI RNDQDQA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018469618.1	1e-130	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A078IML8	1e-111	A0A078IML8_BRANA; BnaC06g24370D protein
TrEMBL	A0A0D3CX45	1e-111	A0A0D3CX45_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QC05	1e-111	A0A3N6QC05_BRACR; Uncharacterized protein
TrEMBL	A0A3P6FXM6	1e-111	A0A3P6FXM6_BRAOL; Uncharacterized protein
STRING	Bo6g091550.1	1e-112	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	3e-57	M-type_MADS family protein