PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6092_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 30143.3 Da    PI: 8.2033
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6092_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.2e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr+g++KKA+E+SvLCdaeva+++fs++gkl+eys+
  RrC6092_p1  9 KRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYST 59
                79***********************************************96 PP
2K-box106.82.6e-35771743100
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iR +Kn+l++++i+elq+kek++qe+n +L+k+++e
  RrC6092_p1  77 ERQLIAPESDSNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRCRKNQLMYDSINELQRKEKAIQEQNSMLSKQIKE 174
                 5566666677789**********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.127161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.00E-42279No hitNo description
SuperFamilySSF554551.57E-34291IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.82188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLMK KAHEISVLCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL IAPESDSNTN WSMEYNRLKA KIELLERNQR HYLGEDLQAM  120
SPKELQNLEQ QLDTALKHIR CRKNQLMYDS INELQRKEKA IQEQNSMLSK QIKEREKVLK  180
AQQEQWDEQN HGNNMPPLPP PQQQQIQHPY MLSHQPSPFL NMGGLYQEED QMAMRRNDLD  240
LSLEPVYNCN LGCFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22174173MEF2 CHIMERA
6byy_B3e-22174173MEF2 CHIMERA
6byy_C3e-22174173MEF2 CHIMERA
6byy_D3e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5058450.0AJ505845.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-a.
GenBankBOU674520.0U67452.1 Brassica oleracea homeotic protein boi2AP1 (Boi2AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443991.10.0PREDICTED: floral homeotic protein APETALA 1 A isoform X1
RefseqXP_018443992.10.0PREDICTED: floral homeotic protein APETALA 1 A isoform X2
RefseqXP_018443993.10.0PREDICTED: floral homeotic protein APETALA 1 A isoform X3
SwissprotP0DI141e-177AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A0C5PW811e-175A0A0C5PW81_LEPSV; Apetala 1
TrEMBLA0A397YS551e-175A0A397YS55_BRACM; Uncharacterized protein
STRINGBostr.10273s0459.1.p1e-175(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-163MIKC_MADS family protein