PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6123_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 163aa    MW: 17968.5 Da    PI: 10.7329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6123_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.9e-2080134155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIr+ +   g+r r +lg+f+taeeAa a+++a+ +l+g
  RrC6123_p1  80 KKFRGVRQRP-WGKWAAEIRCGRAlKGRRDRLWLGTFDTAEEAALAYDNAAVQLNG 134
                 59********.**********54433367**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.7E-371161IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541711.9E-1981143IPR016177DNA-binding domain
PfamPF008471.9E-1381134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2781142IPR001471AP2/ERF domain
SMARTSM003802.0E-3081148IPR001471AP2/ERF domain
PROSITE profilePS5103221.91881142IPR001471AP2/ERF domain
CDDcd000187.05E-2382141No hitNo description
PRINTSPR003672.2E-118293IPR001471AP2/ERF domain
PRINTSPR003672.2E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSG EEEAEEVSEA SHARRRGKRL VKKIVIDPSD SDNKLDVCKT  60
RFKIRIPPEF LKATAAKGKK KFRGVRQRPW GKWAAEIRCG RALKGRRDRL WLGTFDTAEE  120
AALAYDNAAV QLNGPHAPTN FSFPAGNQEV KMVAGASAVA RGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16811411471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894010.0AC189401.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104928.11e-101PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9953e-85ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A3P6BX001e-100A0A3P6BX00_BRACM; Uncharacterized protein
TrEMBLM4CIA31e-100M4CIA3_BRARP; Uncharacterized protein
STRINGBra003936.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.13e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]