PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6126_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 545aa    MW: 61019.7 Da    PI: 4.7974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6126_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.13.5e-1311755453374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L++cA+a+s+++ e+a ++L++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   s+++laa+++++ev+P++kf++l+aN a
  RrC6126_p1 175 QMLISCARALSESKSEEALSILNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---SDQRLAAMQVLFEVCPCFKFGFLAANGA 270
                 79*****************************************************************9...9*************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel.eeLrvk 197
                 I e + ge+ vHiiDfdi+qG Q+++L+++ a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++A+  gv+f+f++ va+++  +++  +L +k
  RrC6126_p1 271 IAETIRGEDDVHIIDFDINQGNQYMTLIRTVAELPGKGPRLRLTGIDDPESVqrSVGGLRIIGLRLEQLAKDHGVSFKFEA-VASKTCIVSPsTTLGCK 368
                 **************************************************9989999************************.5777777766158**** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgE+l+Vn+++qlh+++desv++ ++rde+L+lvksl+P++v+vveq++++n+ +F+ rf+ea eyysa+f+sl+ +lpres+er++vEr++l+r+ivn
  RrC6126_p1 369 PGETLIVNFAFQLHHMPDESVTTVNQRDELLHLVKSLNPRLVTVVEQDVNTNTCPFFPRFTEAYEYYSAVFESLDLTLPRESQERMNVERQCLARDIVN 467
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vaceg+er+er e ++kWr+r+++aGF++ p+s+++++++++l+++ +   y+v+ee g+l+++W+d++L+++SaWr
  RrC6126_p1 468 IVACEGEERIERYEVAGKWRARMMMAGFSARPMSSRVTSSIQRLIKQEYCSKYKVKEEMGQLLFCWEDKSLIVASAWR 545
                 *************************************************666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.342147525IPR005202Transcription factor GRAS
PfamPF035141.2E-128175545IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSLVRSAEPS AATYRNVYNS GDTSVEVFVP DRSKNTCPTD DSYPSQSYDK YFLDSPTDEF  60
VQQHPVTSGA ASVSSFGSLD SFPYQSRPVL RCSMDVAVGF DDEQMRSKIQ ELERALLSDE  120
DDNTEGLDQL MEIDNEWSYQ NESEQHHNSS SADSNSHSSI SKEVVSSSSQ ATPKQMLISC  180
ARALSESKSE EALSILNELR QIVSIQGDPS QRIAAYMVEG LAARMAASGK FLYRALKCKE  240
PPSDQRLAAM QVLFEVCPCF KFGFLAANGA IAETIRGEDD VHIIDFDINQ GNQYMTLIRT  300
VAELPGKGPR LRLTGIDDPE SVQRSVGGLR IIGLRLEQLA KDHGVSFKFE AVASKTCIVS  360
PSTTLGCKPG ETLIVNFAFQ LHHMPDESVT TVNQRDELLH LVKSLNPRLV TVVEQDVNTN  420
TCPFFPRFTE AYEYYSAVFE SLDLTLPRES QERMNVERQC LARDIVNIVA CEGEERIERY  480
EVAGKWRARM MMAGFSARPM SSRVTSSIQR LIKQEYCSKY KVKEEMGQLL FCWEDKSLIV  540
ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5418054425377Protein SCARECROW
5b3h_D1e-5418054425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435218.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLE4MVM40.0E4MVM4_EUTHA; mRNA, clone: RTFL01-01-F16
TrEMBLV4L4H20.0V4L4H2_EUTSA; Uncharacterized protein
STRINGXP_006416300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]