PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6133_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 258aa MW: 29690.6 Da PI: 9.6389

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6133_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.1	1.3e-51	18	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+d+elv++yL k+++++ + v+ evd++k+ePwd+p++++ + +ewyf+s++d+kyatg+r+nrat+sgyWkatgkd+++++ +g+l RrC6133_p3 18 LPPGFRFHPRDDELVCDYLMKRTARSLYQP-VVLIEVDLNKCEPWDIPQTARVGCREWYFYSQKDRKYATGQRTNRATASGYWKATGKDRAIHR-NGSL 114 79******************99988776.6899*********98888999**********************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg++ktLvfykgrapkg ktdWvmhe+rl RrC6133_p3 115 VGMRKTLVFYKGRAPKGCKTDWVMHEFRL 143 ***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-59	10	168	IPR003441	NAC domain
PROSITE profile	PS51005	55.192	18	167	IPR003441	NAC domain
Pfam	PF02365	7.0E-26	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEVKEENKGS ISMVEANLPP GFRFHPRDDE LVCDYLMKRT ARSLYQPVVL IEVDLNKCEP 60 WDIPQTARVG CREWYFYSQK DRKYATGQRT NRATASGYWK ATGKDRAIHR NGSLVGMRKT 120 LVFYKGRAPK GCKTDWVMHE FRLHGTFLHH APNPLKEEWV LCRVFHKNNN EVNIDNNMRS 180 CSNQNASALM DSYINFDHHI NQQVPCFSNL NQTNQSGFDT KNPNPLSKPS SDQMVLRALL 240 SQLTKSGKKS QSYGERSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-53	14	169	11	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018461990.1	0.0	PREDICTED: NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	1e-114	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A398A0Z3	1e-177	A0A398A0Z3_BRACM; Uncharacterized protein
STRING	Bra001480.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3619	28	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12977.1	1e-155	NAC family protein

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]